Basic Information | |
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Taxon OID | 3300021956 Open in IMG/M |
Scaffold ID | Ga0213922_1078342 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 690 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9263 | Long. (o) | -83.4268 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F001477 | Metagenome / Metatranscriptome | 687 | Y |
F003863 | Metagenome | 464 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213922_10783421 | F003863 | GAGG | MKEVSGNQAIEYRNYRRARDRALARLSQLYADDYKRLLLEERENDEQEGKKWVGVDNSSRITITTRTRESAIPAVAGRTDYEDPNESYDGGEA |
Ga0213922_10783422 | F001477 | AGGAGG | MSNIYTIHPPKSDLVLFYEVIEPDGANTWGGENAESAIQWLSLAPAGSRILVSAWDSDEEDAHLVGQTIDITKIVRAASL |
Ga0213922_10783423 | F000821 | N/A | RERAMNKEYLEAKFDLCINQAEKNIQEEEIAEAIKNLKRANSALSQLFGFEQEDDNE |
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