Scaffold Ga0213922_1031659

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1031659
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1262
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F003422	Metagenome / Metatranscriptome	487	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10316591	F001043	AGGAG	MSDYKDGFDDGYRFAREEMMEKLSEIDIADIDSWILDRLSEMIEGGSL
Ga0213922_10316592	F000311	N/A	MYFELTAPNRLSMERAYWDAHIIGLDPTVMSALTFNIGTGSIEKVSRIRDKYNLIESYTSEHEPTEIYNRR
Ga0213922_10316593	F003422	N/A	MMTTNGTKYTFVCDPDECDSLVELTTVDGFGFPNGVVENTCPCGRKMSYIGATILSSTNQTKEEQMETTETSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQNKISTVKDIILEAYAESEDQETLRAIAEALDIQLTRTVEFTCTIEVSGTVDVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA