NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1029251

Scaffold Ga0213922_1029251


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1029251 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1333
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003265Metagenome / Metatranscriptome496Y
F066529Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10292513F003265N/AVFLHYSLGYVVRWLLLIPFVFLVNAKSPCTVADFYAISWLGDPTLRHMQLSRWLTTNGDNCSSEQLVIIWNRLAEWAGAADSAELRGKILYFYARAREREDKK
Ga0213922_10292514F066529GGAGGMIDKIRLFPMVDASGYPDKTDATQRRIEKHQEEYRAVVKAAKAERKIEDLLLELYNKRAEQQKLRLEIFNNRKLDVYV

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