Scaffold Ga0213922_1008016

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1008016
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3047
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011142	Metagenome / Metatranscriptome	294	Y
F043286	Metagenome	156	Y
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100801611	F011142	N/A	MAVVKVSGKVSKIFGASSQGLSLVESYKSATGEDYTRTWTVWFAVSHNLPEGSEVTVFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVEAPKAPVVSAPF
Ga0213922_100801612	F043286	N/A	QDNQVECRRCGFRWAVNAEKRGRKDLLCISCRVKPATTIQYGKLRCSPHQGKLDQDLNPIDEQGNLILSGERICGHRDCVNPAHVVAE
Ga0213922_10080165	F077016	N/A	MSAERVREYYRKQGEERERARLIDLLMEQNVIRICGVTGKLVFVNCNTLEVLYLKDELLNEVAA