Scaffold Ga0213922_1007031

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1007031
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3308
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047475	Metagenome / Metatranscriptome	149	Y
F057112	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10070312	F057112	GGAG	MEFTADQVWGLAVEADRINSGYVKDAVWGQSDSGESKLIKQANKVMVKQWLRDNRQPSAEDTEKGREYRNFFNTYTLKALMGGLSDFDKQALRIAQMDTFTGKNMLEFAIVSCLPSTARREQERTELKREVYSSEQLVGNVGDVIRGDIEVISSRYNVNYNKHKIVARMGEAFVDFWFSQNLDKGAVRTVQGKIKAVRGDKTTQLNFVKIRG
Ga0213922_10070315	F047475	GAGG	MEGAQITGCQYIGPEQKEWPFTMCGCKPFPGRVYCEDHVWLVYQKGTNVNGKRKIKEIEKELAELKRLEEVAEIEDV