Scaffold Ga0213922_1005358

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1005358
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3932
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100535810	F003863	GGAGG	MTESRQVSGMQAISYRNYRRARDRALVRLSHLYADEYKQLLVEERELDEQEGKKWIGVADNTRLTITTHTRANAVPAFTGDTGDAGQDEGDNGGEA
Ga0213922_100535814	F013279	GGAGG	MQYDYRCPQCNSELTIERSIHDEPRSPSCFECHVEMIRKFDAPSIQFKGGGFYVNGG
Ga0213922_10053585	F003212	GAGG	VKDRYLVTLEIKTYDGDPARWDWDYIFTSGDEVKVIETQYKGRVLPTNEGESDDTIQGN
Ga0213922_10053587	F000821	AGGAG	MNEEYLRAKFNLCLDQAEKDIKEEDIVNAIKNLERANSAMARLFGLEEDNE
Ga0213922_10053589	F001477	GGAGG	MSNVYTLHPPKSNLILFYEVIEPDGGNTWGGEHAESAIQWLSLAPTGSRILVSAWDSDEEDAHLVGQTIDITEIVRAASL