Scaffold Ga0213922_1005076

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1005076
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4042
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F002935	Metagenome	519	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100507610	F000311	GGAGG	MYFELTAPSQMAFAQAIWDAELIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYGLTESYWSEYEKTGY
Ga0213922_100507612	F002935	N/A	RNKMRDRTKGYEGKLIDGKKLAEIANAIYALQYSDDFNKCTIDNLLFIELEEKNVFGEPKYALVCSEGVGWEQDEYGCLEVPTNIGQMGLWNGRVFISVDTVKSCVTDTVADISDYIRTFGDRLDRNCMLWQSKMSVVPATISL
Ga0213922_10050762	F000263	AGG	MNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAIEDESEEAMDSMDRTRCEGALDTLVSLYDLTYQLSFAISDKERRDSGEINERNQQ
Ga0213922_10050763	F063705	AGG	MTLLDLDWKKMTKSSAFIEYMKVHLISLNQDLEDARNNEPLNEDEHWESDDYYYGAIEATNHLLSVALGIMAESNERYIYE
Ga0213922_10050769	F001043	AGGAG	MSDYRDGFDDGYKFAREEIMEKLAEIDINDIDSWILGKLSEMIEGGEL