Scaffold Ga0213922_1003827

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1003827
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4783
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F079821	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10038274	F005703	GAGG	MGWIAACVLIALLLPLGAMLYLDILEAKHEVKQQVEKVEKLRRQIEQEKRRNDKT
Ga0213922_10038277	F079821	GGA	MSLLNPAVWIALLLSLVASFGAGYYKGGVDEFLKQQAEIARLNDEARQKEQALVTAVQTQATQLVKAEQNAKVLSQKRNADIDSGALKLRIPVKASCPTIQTTADAPIAERSDGGTAEIQPEVAKAILAIGDEADTTVRKLNACIAVYNQVREMLNQKGNP