Scaffold Ga0213922_1002647

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1002647
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6024
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023844	Metagenome / Metatranscriptome	208	Y
F043403	Metagenome / Metatranscriptome	156	Y
F071245	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10026471	F043403	N/A	GSNGTSWSHGNISDQVLIAKNNPAELEVKGRMVLNGRDLEERLDTIEKVLQIPERDVKLEKKHPKLKKLYDDYINALGKYRTWESIKGDE
Ga0213922_100264716	F023844	GGA	MTAQEPAQGVLLVNSWGTSKMYKAVCECGNDDCSHNIDIEADDHDVTVTIYTKSRTNFWSKSRWHHIWTLLTKGYVDYETSMVMHKQVALNYANVLQLAVKDVEELRNARQNQRSNEHPQ
Ga0213922_10026476	F071245	GGAGG	VAVLDTLYQKKETIVQENDLEIIVAWHNQGTLWWNETCALVLQVFGLPGDRFIYKPFENFMTFTFKSKKDADLCRILLSERL