NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1002487

Scaffold Ga0213922_1002487


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1002487 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6287
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057002Metagenome137Y
F063629Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_10024871F063629AGGAGMNDVVETQQSAFDRLIEVFGSIKGICNAIGVKYVTAYAWKMRNGIPKKWHKAIIEASNGKLTENDLG
Ga0213922_100248712F057002AGGMSITKKFNKELHDKYDPPAREAVTKWVKMKWGLDCIPNPNEFAVDLIVLREGKRAGYIEVEVRNWGFCHYSTIHLAQRKEKLFRQDLPVLFFALTQDLTHAYWCRAEKAVACPLIEVKNFEVPQGEMFYDVPKEHFKFVDLTDQF

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