Scaffold Ga0213922_1001861

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1001861
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7560
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014487	Metagenome / Metatranscriptome	262	Y
F035218	Metagenome / Metatranscriptome	172	Y
F102646	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100186115	F102646	N/A	MAFSIIGSSIDSKVLQRQNFNKEPNGLETIIEAYAIKTANRETIVPEKNTLHSAFSSSSKKYSRMAVESVATEEQDGGITQMLVTFVGLTSSTGLPPPIIRLIPTAGEGVYGPPLVIEAEYVTDVSETSFMAGQLAQNNALAGLQLFTPTIKMPAYINGVAMPKDPREAFFSSGVGVL
Ga0213922_10018615	F035218	AGGA	MPLTKNPSNIDNFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSSASGTSKVGYFDPTAANMTSSAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGAEFALQSGVIQARLIGYNASYLTPTSYTTLTNGFGLSSADNRFFGVVIESDGAGNINLYGADSSINPNINIGQVPLLTLTGGPTNDISTNRFGPEIQCSNSSSSPTASPSAILQSTHWLLDVQ
Ga0213922_10018616	F014487	GGA	MPLLFITLLLCSCSQRTTDNNALPKYSDMGAAEDAGKAK