Scaffold Ga0213922_1001791

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1001791
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7740
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019834	Metagenome	227	N
F027179	Metagenome	195	Y
F072344	Metagenome	121	N
F078721	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100179112	F078721	GAGG	MIVDVSGINKLMDIWGEDCICFFNETETTLSKLREFFEDNNLNFPIEEIKYPYSEVEINNNILLIVNNKKNRDDLKISKRDNIDLDV
Ga0213922_100179113	F072344	N/A	MFRVQLNKCHCKLIIKTLDLHKTVIKGEINKISPLMIENKKTQLKYNYDFEESFDFRAHSFFNLLCDLEKEHVKRYFNVLQLYPRSDTIVRVKKKLYSLMHFLSGDLSDVLPVSFSSDEINVIKLSLELYFNLLCGKFEILSKVFEGLDINLNFEVIISRLCENRDLFTNLVDQKSSLNISSNLIYYKAKWAWDMFNVLEGLEYGKIGSIPLLQIEEVDDSRRFRH
Ga0213922_10017912	F027179	GGA	MRMHTLKIEKLIYMADGLFLYETDDGYIVTDQNDNILKQSKTSTTCSRYISKTLQSRRAAERYAIEEINKSKV
Ga0213922_10017913	F019834	GAGG	MKELKFTITGTMFVPDNAEYECNFENQIYSFKIGDKTYSLIAGLEADEKEIIVTDDNFKSHDIGFFEYEDAYFED