Scaffold Ga0213922_1001699

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1001699
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7989
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F020664	Metagenome	222	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100169912	F004231	AGGAG	MSVKPSDFQHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKHITYDIDRKQYNHCENKAMDEMRDITTQWHKEWEECFD
Ga0213922_100169913	F029673	N/A	MIQHLRMVAVSENTITGMSNAFDLGAEHERDVVSSIIFNMVKDQHLAQNIVDTIRVRE
Ga0213922_100169917	F079808	AGGAG	MKIKDEMQAIYEDEANVYYCCYCLQPQAGKIGCCQENHFVEFRYLDNDCKQQIAEEILNG
Ga0213922_100169918	F032957	AGGAG	MDDELMGTTRLFPRTLEEAYPKIYVNEGVFEGPFYSAPHINDVWVLFGLITVISMVSVAIWRYF
Ga0213922_10016994	F020664	GGCGG	MEKQETKHNLIKFTEAERHILKTIGKGSYAEGARICIMWGAHFYNLGLNTEMDLRHIGLVTVSTTDKHPHE