NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1001588

Scaffold Ga0213922_1001588


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1001588 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8383
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F006660Metagenome367Y
F014737Metagenome / Metatranscriptome260Y
F022651Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100158814F002997GAGMAIARFENIAVNSLTFGKSDFGEQSTTQTKWFDTRARVSDVANSLRISERYRLYQDLVQLTLNYTPNTKQIVDRQDLYSFTWRGHEWRISDCREANDRMSITFMCYRNDPVTAV
Ga0213922_10015883F014737GGAGMITTMTALNSANIRHAEFVKLSVGNPASPTVYTFCNAAAPVTVSGITFSSLGALLAVGEVQRDVKATSFDMSIALTGIDPNYVALILSSNIKGSTVEVWRGFLDSNNQIITTPTLQFFKRWQGIINNVSITEDFNEKLRQRVATCNITCSSMRRVLENRIAGIKTNKTIWQSIYPGDTSMNRVDAISNTYFDFGGKPNTGSISEPGGGQDIPETQQN
Ga0213922_10015884F006660GGAGMSFQTIVDIQQSMTVNNRRTIGQQVTRGGQIRTAQYLTAVPWVFTITPHNFLYYPQARDVIQTIDNLDRQTAANITFNTSNLQWFTEYKGGLSLVQAAALTLASVPPANSQTITVGNLPAVGASTVVFAAGDFLQLGNYVYKVTQAVLRGSGSTVSVNLHRPVIGTPATGTLTAVGKDVYFPVYAEVCPTYTLTPMTNGAFINWDEPFVFRENVAP
Ga0213922_10015889F022651GAGMTTTIQNTNDLLSFLVTQAESRRDWFGFTQQRMTAITLAHEIAARHADKLTPEEVVEYAIAINTQIFHKIIKPQ
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