Scaffold Ga0213922_1000783

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000783
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13375
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013741	Metagenome / Metatranscriptome	268	Y
F019966	Metagenome	226	Y
F047566	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10007831	F047566	GAGG	MKLVLESLKVKGKAVAEVVGALIWRGFGIGLFILGGSAGVGSALTGSWVNGVLVAWGTLMISVIGVLGYAIATTGKATKADVAKGAVDAIKRAETESQAKN
Ga0213922_10007833	F019966	N/A	MSDFEVSTEYKLQVLNQRLEQLNIEGWHNEEAKLIAQATLNSEEVTRLTDNIEIIKNAITAVKEQITALTA
Ga0213922_10007836	F013741	AGGAG	LSDPKPTNQTLLLQIVRDIEILKANSIQILQASQDHETRIRDLEKQANKNAWIPPLITAIVTSVAVYLISKGFLK