Scaffold Ga0213922_1000584

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000584
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16378
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033036	Metagenome	178	N
F035766	Metagenome	171	Y
F050317	Metagenome	145	N
F050325	Metagenome	145	Y
F072276	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100058416	F033036	N/A	MNYEIEDIQGLMNDLSTIGQGKKCLVYKKHYGFGEDLKGVNDGVTPLYITKEGADLMHEAKFGRRIKETTLAIIWSNWEKVPGRSWTETPLPAADLVESGLYRVGLFQSSPRMHFPGELPPERVKMAYEILMDQILKVRFDEE
Ga0213922_100058427	F072276	N/A	MSKTLIETSTRKRFATKFMVLENHRPTEESVVVFKDSEDSPNFLVIRYERDAEGKMFQRGTLEEVNEEQFKREHAPHANWDNTTLREYDQKFQDWRSSSLMQKLEQVGEDEV
Ga0213922_10005844	F050325	GAGG	VLPRWGRNHLQESPSLPFIIMQLDMVIRIGKYKGKTVKWVMYNDRRYFEWAKVNAPSMFEPFKPQTKPRVSDTNTEGKPTYVEPPEESDETRDSWTNPSIFFQIGQQMLRERGDL
Ga0213922_100058443	F050317	N/A	MQEEKYYIVAAGGYLPKPVVEEIIIKESEMIESEDDFADFEDYKTYILEEAAAEFDQRFAKSIILTEAQAKEISVYLTK
Ga0213922_100058445	F035766	N/A	MTTQKFKVLGVEQGITITRPFNSEMYAHNDKVREMQNDAIIAALESLKDSEDEELIEKAAKACSGYGYGDGYEYNDMIDDAIKNVETSNNSWMREEIWPDFLRFGLVQPLDTDYVGYKKL