Scaffold Ga0213922_1000505

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000505
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18401
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (60.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F011390	Metagenome	291	Y
F040618	Metagenome	161	N
F057375	Metagenome	136	N
F059958	Metagenome	133	N
F078705	Metagenome	116	N
F095475	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100050528	F078705	AGGAG	LRFPFLDCSFFLRYDSVMYIAVDAIASEDDPKLSYLLFPYDEDFLDAIEENLKEIRIDDEISFSLEDALLIRGEYHYVRKKVTMTDISEHRFSLGHNTDTIPKLSKPKVHLTNDYFYFSGYRTPTSKNDKANIKYVSGNFNLVSIENLRKYVKSKKAMVE
Ga0213922_100050537	F040618	N/A	MENTTTVRMSMTVKIKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFTPEENYFDGVGSFGNEIWHLNPDNGEMCGKTYLYSTMTDILCVPYSFSQPTKEKSPTFLFAIS
Ga0213922_100050540	F004476	AGAAG	MLFSRNGFKSVDTTEAFVKEALEFGNKDVVLSLVHETGVIDIVFSPTMDAIEAEIFHFLNDGTELKYSMPIKSLTNNILSTLQMTSAIYAYMSEAYKVADMFRSTTRQSTDYAN
Ga0213922_100050541	F011390	N/A	MKYVIYFVSKENEMKIQTTNYGLCTVEKKKYQNNDNLALILVDEDGQQVTNISTNVFPMGENEFCANHYNMGATLWKDIMASGFFKETGEKVPSGFCEYPVCVLVEN
Ga0213922_100050544	F095475	GGAG	MKNKYGKQCCYCGCYVSAGEGRCWWWDESKRWYVACEDCFQEKKEERRKQG
Ga0213922_100050547	F059958	AGGAG	MEKITTLEAVNKLVAFNQLYNKIVTATTEAKNALTQAEWALEDAKFEILRTVDVKELGSNSEQREAKLSGMLAEHVKSVRCSTLTYELAKAEEQKCRANLEFAKHLVRASELLMEA
Ga0213922_100050549	F057375	GAGG	MAETVYFVNASDVFDAIELGDCEQTEFLDQFTYGDNLTDLTLVKKQTFVNRLVEFIRDCEDIYEKDVVMQNLKEYNFGLLDCIKHVNIEG