Scaffold Ga0213922_1000277

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000277
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28867
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028101	Metagenome	192	N
F040069	Metagenome	162	Y
F057995	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100027712	F028101	AGAAG	MNNKLTREELEKIKVLNLLMWTQATLYASDECEPIRWFYNHQTKMLMKRLNESIKREHGKTITALWEADGAALPDITKHLEEFTFEMATYGYWMLPELIKLIQDAKENQPKIEMV
Ga0213922_100027721	F040069	GAG	MKIDLTYPRKFRCVQSSSYPTDQLDYNQLAQHIAQQTNRTPLERMTDLLKENTYVR
Ga0213922_100027742	F057995	N/A	MATASSLYTYNVMINKFQQFAEAHALIRRFTHGQISQADLEKEGEYPWMHVVPTGISFDKGQLTYSFDIWFADLPRDKDEKTEYQKQSLSDCILLAGDLMSMLELGGFFDESVVLTTPVSGTPFMEEFSHVLTGIQLSVDLTVDHIWDACDIPYLG