Scaffold Ga0213922_1000255

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000255
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30536
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F042895	Metagenome	157	Y
F058142	Metagenome / Metatranscriptome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100025510	F042895	AGGA	MHQLIDKPMYVGHIQNFDKMVTELSPYMTEIEIDQCISFMHTLKDTKNDINPSPEDCKTQLQIMFGRDRFLELTQQWGQKNQKFLSIFGSLKFKEKSTGKFYDGLDETDNPEDYEKVYI
Ga0213922_100025517	F026558	GAG	MKTKAELLKRNPIYSSIYNEMLAYQYAYLGGLPFKMFVRKKRPSEDSTLYQDLVANTIAQPICRYIVDTINDVLFEPGIKRNMQFCTPTGTQINPKNTEWADLLLLDADLTNRSMNGFMENIGDLTSIYGHCWVAVDMPQQGQGSLGRPYVCAINPLNVWDWEFDYYGGRPMLKCVKVMEMEEEDCYYIKCYHLGDANTPSYWESYEVSKGPSDTEEPAELIGSGTFPPGMSLPIFIAYGRRDPRTMDIGISDIDAASDGMREYYKLECEKYTALQFAHTLIRADKGISIPVHAGAIVRANEGQVEAIPIDTGDVDAIIKAQQDILEQIEALTGLGGLRNSKNQIASGVAIIEERKQLHRVAKAKARLMEITEEMIYTYAARFMDQRWAGEVNYNTDYEAHDTNYRMALIKSAKELVGDNQMIQALITKEIIGMLAPDTSIPEYESAYIQTIPDVDLRNLMTEQNNEVLSRDLTPSMIPEHEMYGEDDTNETTDNGDGIAENGDNTSLLGGAGTPVTNVGMTYYTQQVAPVMLNSLSTGR
Ga0213922_100025519	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPGNTYYATSADGFQRVLQLGAMEVVAAGTDPAGSTAGFTSNSILELIRNVKQNFKKARMPGAPVIVLDSNGNANYTSATPAGQTGSSLTRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQDATRTVAGVATQPVLVGAYFGDSALFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQA
Ga0213922_100025521	F058142	AGGAG	MAEVTYYVLNEPTVTETQISDVLRRDIPKAWNIPIFSDFPSDSEVVRYGIYVSDVHTVERNPHQLGIQYCGSIYHAYDEFGITYISYQDDPYNTAVNAIIANLVTAIKDDGVQLFDGYFERDFDQVRTYGPTQAEKHTWTFRMLRMEFNTPN
Ga0213922_100025529	F101171	GGAG	MDNIPAVANNKAFVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQPETISGQTYSPLGGLLTVGVQQRDIRVTSADTSISLSGIDGNNIYTVLANKISGSKLEITRGFYGGDGNVANNYNLTSNAHRFTGIVTNYQITEERVDQDDKFVVTLMASSFKTVLENRIAGRKTNSESWKEFNPTDTSMDRVPSLADRSFSFGMEPKQGATTQSQAKTDSSQIAQDTNTDTSYRTF