Scaffold Ga0213922_1000242

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1000242
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31887
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F007170	Metagenome / Metatranscriptome	356	N
F008689	Metagenome	329	Y
F009888	Metagenome / Metatranscriptome	311	N
F012219	Metagenome / Metatranscriptome	282	Y
F013760	Metagenome / Metatranscriptome	268	Y
F053298	Metagenome / Metatranscriptome	141	Y
F058132	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_100024217	F001733	GGAGG	MASISIKRLVVVVVVAFVASFTTVFGDGIRTAQAQDIAELGAVMALYGSKAVAAGVSAAVSSVLAFLTMPFKGVEANSLKVGK
Ga0213922_100024218	F012219	AGGTGG	MNIQNFRIEKEPAPSTDWRVYGDIFDDSGTQIGTFGPDGTSVNIWWVSQDADFQFNIVSQFAVIMAQQITQGTAE
Ga0213922_100024221	F009888	GAGG	MAIIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIATGSAYSFGGGAVTLTKQYSAQGILSVLNPAAYPTATDIRLTISFTVGSTVRRFGPLEIEVLAP
Ga0213922_100024223	F007170	AGGTGG	MAYEPAVIEQWLYETLSNDTTLQGLLAVDNKPNGYQQGIYNTVAPQLDPVSRKPVQVPYVVFDRAGNAGQDQDVICGSRVFTYPTYRITVWDTESGAMSMSRIQTIMSRIDTLLDNQRVTTTSPVFYCRRESTAQTFGLSSGGRTDFGVTAVYRIVTQQ
Ga0213922_100024225	F058132	N/A	MALSNLKQIPKDADKGTLVVDLSDIAGDGAELRFREPKAADLFPDSKELQSLRVAFAEFPEAMLYQIYLLGRCYVPDPTDVAEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKDAKNDSEV
Ga0213922_100024239	F053298	AGGAG	MRRCNECAQGVNDTDQVCTACRLAEWKDQQEQAEAERQRQYALEANRAAYLAKKKYMRDALKAGAITVLCFLLFLAFVSATNEAMQYEWETKPAMLKANGVK
Ga0213922_10002424	F008689	GGAG	MRFGEVIQALMAGGGNAVWREDWGGSVFLRYSELWNVFELHGPKGRVTQLEELSLSPGDLFANDWALVAIDPRTGEVAK
Ga0213922_10002426	F013760	GGA	MVFSSMIIFTLGLLLGAGCLAVYNEMYTRWLYADVKRRAKQQGISERQMKDALVWATKEEIEANLNARPATKR