NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1035802

Scaffold Ga0213921_1035802


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1035802 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012339Metagenome / Metatranscriptome281Y
F018925Metagenome / Metatranscriptome232Y
F021290Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10358021F012339N/AKPYNESLTTPPVQNPHSPAQGGYKQQPVNIPGVLDQTRGLYQPYVPQKDNK
Ga0213921_10358022F018925N/AMAANVYTSLANATVYTDKLQITTTANAVTYQVYATALGTAAAAGNIYSAPINIPANTVFEVYSGAGNKVTIIGTPFTALELGTASSAQAGVIGYGSN
Ga0213921_10358023F021290N/AMRAREFVAEAAYTPGKRTAPAHEFERAHPGMVMPGGKGDLYWGRYYDFYRVCSLAGMDPEDIEKEDEIGFFGNLPMFSAYTEYDKKKLKAIMKKLQMHPKDGISDGS
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