Scaffold Ga0213921_1013851

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1013851
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1437
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F005558	Metagenome	396	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10138512	F000821	AGGAG	MNEEYLRAKFNLCLDQAEKDIKEEDIANAIKNLERANTAMARLFGLEEDNE
Ga0213921_10138513	F005558	GGAG	MNESISWSELAELTHVTQVEKFGFCTCEDLDPHEYPYPDCVKEIA
Ga0213921_10138514	F003212	GAGG	VKDRYLVTLEIKTYDGDPARWDWDYIFTSGDEVKVIETQYKGRVLPEEDNNE
Ga0213921_10138516	F093237	AGGAGG	MSYKYTLADAGKMTNRELLNALLAREVAPRTIVGTGYINARQVAIEYLQEEITKEEAK