NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213921_1007249

Scaffold Ga0213921_1007249


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1007249 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2162
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014737Metagenome / Metatranscriptome260Y
F023109Metagenome / Metatranscriptome211Y
F045704Metagenome152Y
F085345Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10072491F085345GGAMVGSLIAAELVGAGIIGTGFAATATAFAVNFAVSQVLVRTFAQEPSSNQQQDNGVRQQIPPSSTNSIPVVYGDAYLGGTFVDAVLSDDQTTMYYVIAVSCISPNGQFTFDTTDMYYGDRLITFKSSGNTNAVASLTDEAGNVDTAIATNDLLQIYLYKSSASGTITGLNTSSPPSTVMGGTDIDSAYRWPSSGRQMNGLAFAIVKLKYSRDAQTTQLEPITFKCSHYLNSTGVAKPGDVWYDYITNTVYGGA
Ga0213921_10072492F023109N/AMIRKATRYDIPRLLEMVEAYALEMPVKSLSDTRNHHPKDVEQLLFEIIMGRGFILIDKHMTGVLIALKNKNIWSKTVTELNELLWWVEPEHRNGTIGGRLWKEFDRLAEEMLKEGTIQMVVTSVSPMGPMIDYTKRGYSILGASFFRE
Ga0213921_10072493F014737GGAMTTIAAVSSSSIRHSEFVKLSVGNPVSATYSFCNAAAPITVGSDSFTNLGALLLVGDVQRDIKATSDDMTISLVGIDPSNVSLILSSNIKGSLIEVWRGFLDSNNQIITSPTTQFFKRYQGIINNVSITEDWNQDTRTRIATCSISCSSMRRILENRISGVRTNKDSWQFTYPGDASMSRVSEISNTFFDFGAPPKRQTQATAPDQNFVDSAQL
Ga0213921_10072494F045704N/AGNLPSVSSTAKVFKAGDFIQFGNSSGTKYVYKVTEDVLRGSGSTVSVNINRPVIGTPSTGTLTNVGSNVYFYLVAETCPTYTLNPMTNGAFVQWDSPFVFREFIA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.