Scaffold Ga0213921

Basic Information
Taxon OID	3300021952 Open in IMG/M
Scaffold ID	Ga0213921_1007249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021952 Open in IMG/M

Scaffold ID

Ga0213921_1007249 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2162
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2162

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F045704	Metagenome	152	Y
F085345	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10072491	F085345	GGA	MVGSLIAAELVGAGIIGTGFAATATAFAVNFAVSQVLVRTFAQEPSSNQQQDNGVRQQIPPSSTNSIPVVYGDAYLGGTFVDAVLSDDQTTMYYVIAVSCISPNGQFTFDTTDMYYGDRLITFKSSGNTNAVASLTDEAGNVDTAIATNDLLQIYLYKSSASGTITGLNTSSPPSTVMGGTDIDSAYRWPSSGRQMNGLAFAIVKLKYSRDAQTTQLEPITFKCSHYLNSTGVAKPGDVWYDYITNTVYGGA
Ga0213921_10072492	F023109	N/A	MIRKATRYDIPRLLEMVEAYALEMPVKSLSDTRNHHPKDVEQLLFEIIMGRGFILIDKHMTGVLIALKNKNIWSKTVTELNELLWWVEPEHRNGTIGGRLWKEFDRLAEEMLKEGTIQMVVTSVSPMGPMIDYTKRGYSILGASFFRE
Ga0213921_10072493	F014737	GGA	MTTIAAVSSSSIRHSEFVKLSVGNPVSATYSFCNAAAPITVGSDSFTNLGALLLVGDVQRDIKATSDDMTISLVGIDPSNVSLILSSNIKGSLIEVWRGFLDSNNQIITSPTTQFFKRYQGIINNVSITEDWNQDTRTRIATCSISCSSMRRILENRISGVRTNKDSWQFTYPGDASMSRVSEISNTFFDFGAPPKRQTQATAPDQNFVDSAQL
Ga0213921_10072494	F045704	N/A	GNLPSVSSTAKVFKAGDFIQFGNSSGTKYVYKVTEDVLRGSGSTVSVNINRPVIGTPSTGTLTNVGSNVYFYLVAETCPTYTLNPMTNGAFVQWDSPFVFREFIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213921_1007249

Overview

Ecosystem & Geography

Associated Families

Sequences