NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1006965

Scaffold Ga0213921_1006965


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1006965 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F015354Metagenome / Metatranscriptome255Y
F026825Metagenome / Metatranscriptome196N
F028111Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10069653F001272N/AMIKIELTTEQANNLLQLIDIAVKAGGIQNAKVGVPLADIILEAAKSLQQPTADSSN
Ga0213921_10069654F026825N/AMTDHHAFIRDISIGVGGPAIGILGNAVFSDPHLKTASLALGALAALLTCAVKAVELYRKIKNDK
Ga0213921_10069655F015354N/AMNANLSSLLRHLLTAAGGFLVAKGLASADQVGELAGAAVSIGGVAWSIWKNKQLAAASPDKKPE
Ga0213921_10069657F028111N/ASVKSLVGTDGERLVSLLKSPESDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERASEISEAKSDYDAIISKYQQDSEQGTKAALESATKTWQKVSENARALEIFEPREGDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKYRGSEPGVTSKATSGGSRPANTNAQRSEDFVASVMKSLGR

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