Scaffold Ga0213921_1006965

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1006965
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2214
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N
F028111	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10069653	F001272	N/A	MIKIELTTEQANNLLQLIDIAVKAGGIQNAKVGVPLADIILEAAKSLQQPTADSSN
Ga0213921_10069654	F026825	N/A	MTDHHAFIRDISIGVGGPAIGILGNAVFSDPHLKTASLALGALAALLTCAVKAVELYRKIKNDK
Ga0213921_10069655	F015354	N/A	MNANLSSLLRHLLTAAGGFLVAKGLASADQVGELAGAAVSIGGVAWSIWKNKQLAAASPDKKPE
Ga0213921_10069657	F028111	N/A	SVKSLVGTDGERLVSLLKSPESDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERASEISEAKSDYDAIISKYQQDSEQGTKAALESATKTWQKVSENARALEIFEPREGDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELSKYRGSEPGVTSKATSGGSRPANTNAQRSEDFVASVMKSLGR