Scaffold Ga0213921_1006337

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1006337
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2337
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023571	Metagenome / Metatranscriptome	209	Y
F098925	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10063372	F098925	N/A	MAQSYDLPAAIVSDTLETLMGHLATADAKCKECEAELKRLRDEIAGIMIAADVTSERTVWGLVSLTSRDKITYSDAIACLEIDLKAAKSKEVATGIAKVAEGDKFIRVTWAK
Ga0213921_10063374	F023571	AGCAG	MIGSTLANSWFGWGTDPPIRATILSVHHHTTPMNFSSLTFSDHAIKGATKAQHTFENGWTISVVAGPQDSGLYGDIQHDTFEVAVIRPNGNMLDDVICWQTPVQITTMMHLIEML