Scaffold Ga0213921_1005305

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1005305
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2624
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F013514	Metagenome / Metatranscriptome	270	Y
F057309	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100530510	F057309	AGGA	MNPLLQKYEELYGKKEPPKMPRIEDYEGEETFADELKKSKPPILKSYDLDDLKASFQQVAEQLQNDKAQVVSMNMEFGDHMNKITFEVYVYKP
Ga0213921_10053057	F008402	N/A	MTIEITNQVRIQEHTDYWYTVEDTHLDVGFEGCTISYWELPSGVNTSEKRVNHICMEKEEALAVADAIYKFFKKD
Ga0213921_10053059	F013514	GAGG	MSTNLEELQKYLDDNNITFEEYMRANMITDEERKYIDKVWMNAIYKNLGEDT