Scaffold Ga0213921_1003866

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1003866
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3202
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F017133	Metagenome / Metatranscriptome	242	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10038661	F006385	GGAGG	MVLDNGTLIAITIALAGAVTVMILFWKQNIEQQKEIRRLQIALRDERKKSRKA
Ga0213921_100386610	F093845	AGG	MIKATLTTTSGTTKDMKFNSKEHLLEFIELFKSTLHQGTAVCIDAPLVGVHSGWIQGTGTKE
Ga0213921_10038663	F000447	AGAAGG	MGYIEIFRINEEGAGWVDLSDATPQELLDIEIGLFQEGAI
Ga0213921_10038666	F017133	GGA	MSNSIFGQGFATLSDYPKGLMNLCPCGQVVLAPANYHEGFPWWENPNKCKELFEELNK
Ga0213921_10038667	F003965	AGGA	MNSNVIIEVCKTHTPHKSAISMVGDDQFTFCEVCENNIERWYNDTDPERLPMWTDWKVSK