Scaffold Ga0213921_1003676

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1003676
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3308
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014365	Metagenome	263	Y
F030692	Metagenome	184	N
F062704	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10036766	F030692	GGAG	MSEVDQKKGVVVKFDPIEYEALRAIGDGNISEGFRVCLRWAVHFHAIGLRSEDDLQYVGLCTVAD
Ga0213921_10036767	F014365	N/A	MKTYQIFKNVSYEYFVEAKSLEDAQTKIIEEQLAADSEELIEWVFCDEHDGANWTYEPVTQS
Ga0213921_10036768	F062704	AGGTGG	MTNAQALTQALILAITAPDDFKAHQAIQLSEELAMRLNSVEVDQCKADALLILEMA