Scaffold Ga0213921

Basic Information
Taxon OID	3300021952 Open in IMG/M
Scaffold ID	Ga0213921_1001298 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021952 Open in IMG/M

Scaffold ID

Ga0213921_1001298 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6606
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6606

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F010982	Metagenome	296	N
F012452	Metagenome	280	Y
F016643	Metagenome	245	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100129810	F000403	GGA	MSDYMEIINPQTMLAKLLHNGEIVKEYKVEQCDKCSKLTKLDSFGYQKGYGNEKIIWFCGGCR
Ga0213921_100129811	F010982	GGTGG	MVRLSRADEIVAASTGLARESRYGSNPKFKGNKGNFHHAIVIHSEAAGAEIATARYFGIDDFTPTVDTFKNEPDLWLGALGIEVKQTGHKAGHLIITDDDRDTDVAVLVVGESPTYYVVGWIPVSVAKKPRYKASDGSYWVSQINLQPIENLKRSQYANSGI
Ga0213921_10012982	F016643	N/A	MTLWNPIWRVTIDGVVFTNYALANMTITSGRVNIYEQANAGYVNIQLINLDQSNVDLNINDSVTIELQDSAASFVPIFGGTIVDFEISVTATGSVGINQTVSIIALGALSRLPRALTEGALASAHDGTQIAVILEDLLLNNWSEVPAALTWATYDPTETWANAQNVGLGEIDQPGNYDLAARTSNITDVYSLVSALATSGLGYIYEDGYGRISYADSTHRSVYLATNGYTDVSAAQALSNGMSVATRAGDVRNVISLNYGSNSSSNVVDSDPASVALYGRLSQIISTTLKNQTDAQAQAAFYLSLRAYPQANFSQITFELTNPELDNADRDSLINIFMGLPLRISDLPLNMTAGTYLGFVEGWTWKAAYNSISVTILLSPLAYSLQALRWEQVSSLEKWNTITPTLDWADALVVA
Ga0213921_10012989	F012452	AGGCGG	MGFLDNYEGNKERTDRWIATFPLGRLEAHIVNFDADKGSILVQAKAWRDQNEIEPAGIDYAFGYLAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATRETMQQVETMTTKVATADPKQEYDYWTTKHGDVPSFKSEDELTAAEKAQTIGGAIQEVTSQLGGEMLKEAPQCVHGHRVWREGVSAKTGKAWGNYSCVERKPNQCDPVWYVFTSDGTWKPQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213921_1001298

Overview

Ecosystem & Geography

Associated Families

Sequences