NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1001272

Scaffold Ga0213921_1001272


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1001272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6726
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F006264Metagenome / Metatranscriptome377Y
F041182Metagenome / Metatranscriptome160Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10012721F041182N/ASRIAEKIATFESSRAPVISIEHVNNIVKDEDVSAEDAMDEFLDSLRKV
Ga0213921_100127210F003521AGGAMKSLVKNIREFFNKRTKATDAYKEANVEKRTLVIQNGEAASRLMLNLDFALMFNLYRFDLLNRLEESKEDSERIGNAYYVAGVRDFIDFIEKSEYLAKVANKKAEL
Ga0213921_10012724F103134GAGGMSAYGKVISGGAQVQKVGNGAINNKLDGFAGENKRRAQVAGAVRQAFTVRHLSDQTTNGISAGGKFKTVKEKAKVQP
Ga0213921_10012726F001059AGGAMATYDIDALKADLPTAKELAQFVYDKTDGLISLDLIGKPKEEQYLVAKNALEGKKVPAEFLTGHNPYVEKKDTIPEDPLRVLPERSKDLPDPDAQVHYFGATNMPSPLDPQSDKKVYMDFRKYENGLITYQITGPIEKVPYGEKLNKYGQVVPEKYVWIDPRTEERVLRNADGTFTKEGRGVHTFLIGEKGGGVWSLIDRDMVTVTAKNIANPWA
Ga0213921_10012727F006264N/AMEDFSAIFRQRLSGQAEVCARKSLEWLQKDLQGEFKLNPQEVFYLASAAQILLNLRDQYGKK
Ga0213921_10012729F004695AGGAMLDKQNIVVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGRVNFEFERISENDAAGAQQAQKMAMHFINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREQITQYKEVEGTRDQLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMQPDEAESVQEPSGEEVQEAIRNNTIYRAKYKMTGYSTNIQIKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKTQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMITTAWLRKDVDNDGEEEIIEIAYSGSYILYVKEVDFIPLAVMVPKPIVGNHFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFVDAEEIQRGVSALFILDRKFDASKHVYEFQPMQGNLAYVQDAMDRFDADNSRMLGMTNPGDTMNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCTIGLRDMIYIVWKTMVQYADDYNIQQLADAMAPGQPFLDAKSMENFDFLDRNMINIDLALGFLSDENRLTRQQLIMQAQQQFAQVMMQLDPSVPEMFIKARRPFEDTLYALGVKHCDSYLPTLEEAQKIAQAKAQQGPGAAEQEIQSKTDLNKAKTQESQTVSALNIKKAEDIDMDNFFEMEAMKKGKLSAVEID

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