Scaffold Ga0213921_1000550

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000550
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11984
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F043816	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100055016	F020651	N/A	MNIAVLLLTLNRNDLTKRVIDQNFRNSGYNADCFLVDNGSDQVPYEMYNWTNCNVSSKLRGIAAGVNAGLKMTKAYDGVCVLANDILLPENWLLKWVNYSNLIPKTGIIGIHCVEDLPPLTDGVHKVHTPFGDNYLTRELIDTIGGYNEEYDPYGMQDRDFAERATIAGFTNYYLPDLRSEHIGHDVGNGTEYRRMKDESLARAQAVWEKYQPIYHTEKKIKCEF
Ga0213921_10005505	F043816	N/A	MKELNELREWVWSQCLTGQPFSCADVINKIDEMLESDTDIEELLLTSDYEME
Ga0213921_10005506	F017271	AGG	MTDEEKKLVPILIKGFNTKTKDNPIKAPEIVQAINNKREILGLKSNFSEVRLRKIVNFIRAEGILPLIATSNGYYCSKDKEEIKSQIESLTQRAEAIMSSANGLNKFL