Scaffold Ga0213921_1000517

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000517
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12461
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F030733	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100051717	F001964	AGG	MSRNLFAPPRFKVQVSGAIGWSDLKERVVSYRTLEYSTRKEAETVAKELNPGEFTQGRIRVVPVEMPEDYDVYPTPERTKP
Ga0213921_100051720	F002227	N/A	MKLTISSKTNAQTIIDLFNAIITGEVQEHHATPMSIYDEEKHICCIVAANGEQILELIIEREHGDRICPAFEGNPDEEKLP
Ga0213921_100051726	F000922	AGTAG	VRLTPELWEKAKARKLQGETWKAIANDLQLTETSLFQKASKSGFGKLAKEVKEVSLKKKTESLESLSALVRSKLAADAASTLERIEGYSLDGIKDEATRETILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRVAEIQVTGEMETK
Ga0213921_100051728	F030733	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTSAETWSAITLAAGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPSGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAF