Scaffold Ga0213921_1000292

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000292
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18148
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025278	Metagenome / Metatranscriptome	202	N
F032560	Metagenome / Metatranscriptome	179	Y
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100029212	F025278	N/A	MTIFLTIVFLVHLISWILYQKFQFKERDLYATDSHNAYEANKKWHFWKGINHLSVYVLVWSLYGFWSMLLFATSFWFGFDILCNIIVLKRPAFYVGQTAQTDLFIRKVAEFIKIKPEYASALIKVLILLILLILK
Ga0213921_100029221	F054853	AGG	MQDEKTNIEPEVSEEAIEWEEAETTTRSDLISCAYYAYSAVEDIDLTLVSKIEANKIRRIKRQSLDIIAEVIGEMHAEIFDLGEED
Ga0213921_100029227	F032560	N/A	MKQETYQDLENGMQKLLPMERQMLLAEVYHYCWYSPEAYNELKAFLNKWEEGCQVKAVFFKPESEDSTKQI
Ga0213921_100029228	F086624	N/A	MSEVKKESIGAWKRTTPKGEVINFTINGQRYNMWVNAYKDKPAHPDYKIYEDNYVAPTEPKPQSKQEF