Scaffold Ga0213921_1000135

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000135
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29198
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (37.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004049	Metagenome / Metatranscriptome	455	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F032255	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100013510	F004049	N/A	MQASGEGEEDMNVPIGPAAFVFKNKKTGQVIVAPSERWHEYYDKKEDWEHTASINACMAIQYLINVKPKERNRYIRSLTEKV
Ga0213921_100013529	F032255	N/A	MANSQGLAYQFGSPATVTMYSSDNSTAVFSSLASIESYDITHEADTEEVRNSAGEVVGHIGYNERITLNLNLIPSGANAAAALAFCSLGPVNGTVEITGAPNISMMGTANVLNTGRFIYAGGGSVKMTQTGKAMVSITVKKYKNLTTGAAVSLNV
Ga0213921_100013530	F006107	N/A	MNGVALRAEKALVDYLAAGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPIQRTDLTCEVDIEIELQLSADDTDEADVLTTVAALDSLILPLFDDGGASVLNADQDDANGPFTAQFATPSDFGASSISNRSRTFTRSITLFCSATL
Ga0213921_100013531	F005024	GAG	MRPVVNMTVDTSRFDAAVKQYLLSTNRDLHKAINSRFFYLMVRLFVLVPPKSPATERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQSRERKAGRRGLYGEEMKEAASSLYRKAIGSVGYLRSAVVKSIRIYNRGFAQYNKPKWKPLVKPAGYKPPKKTNSALIALANQYGLPEENVAVHKGTVAHGLQAVPGWNPTAFVSMRTGIADNQYNRVQSIYNPAMQKALDDELAELENHMTEALLANGKVLSDNGIEIR
Ga0213921_100013532	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGSSIRCIPASINDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDTGFVLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKSK
Ga0213921_100013542	F005633	AGG	MRIATTISVDKSGKSKIVAGPEVDAAAQREDFNTAKIPEGTKLILWIQGSVAPKVRKG
Ga0213921_100013545	F006262	N/A	VFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQVVRSTSSSDVSVEFAEPGKGGPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMAVVLIAATSYGGDFSNFRREGTFRTGIT
Ga0213921_100013547	F010611	N/A	MTQKEYRMHSGLTSGYVTQLVARGMPLDSAEAADAWRQKNVRARARNIPPTASEQEDTAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA