Scaffold Ga0213921_1000077

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000077
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37996
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (88.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F018535	Metagenome / Metatranscriptome	234	Y
F037206	Metagenome	168	Y
F041172	Metagenome	160	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N
F046915	Metagenome / Metatranscriptome	150	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100007715	F046915	N/A	MPIYLQHPVHGTKVATMEMEAEFDEQNGWLRYNPDTPSAPEVSEVAAPANELEVKRRRSRTTVEAAA
Ga0213921_100007732	F102853	AGG	MKEFVVVYYAAIVVATVGFLALFVPDQPRPTPAECGVAEITPDMSTRDREVCRQLRQHRHRM
Ga0213921_100007733	F044373	AGGAGG	MLRDGYFIKEEPPKIGAHYIPQFYARPATPEERFVQDIMLGQRPEGESPVVKLFGRLLSI
Ga0213921_100007734	F037206	GGAG	MKCQHCGSKTHVVNTTQQPGGIRRQRRCPSCKNNAYSAEVWVAGNVIVGKSIYTKDEAALIKKKGVDARRANEDRRKKDAT
Ga0213921_100007739	F045069	AGGAG	MRYLLLLLAAPAMAAPPDYLTYTNDISVQTVLTQDRPSWCHGMKMAFDIDGLNRAYYGCWAGSQGFAHIEMLDGSKRIIPISRFTKPKEEAK
Ga0213921_100007755	F018535	GAGG	MKTQIDTAAPWYPAHLWPYTYTHGDTELLCFVDWEPADRSVGWTGGAWLIHAYAGGVDVVDLLKDHIIKDIEAEAACSLSSD
Ga0213921_100007756	F012570	GGAG	MQTIKVDGTTYKLKFDRDPVQLAKAARKAWKPAKFKDLRKFPTWTPTVSTADYIRRFDALNFLQSVDYDGASTESTAQYDPTMPLFEVIDENAN
Ga0213921_100007757	F041172	AGGAG	MAKLKTAILRAQETADITGANENLLWEARDVLSLAIMERVDAKSCARNAEQALFLINTYLMESELCKR