NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213845_1213002

Scaffold Ga0213845_1213002


Overview

Basic Information
Taxon OID3300021929 Open in IMG/M
Scaffold IDGa0213845_1213002 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.1553Long. (o)-78.3938Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001296Metagenome / Metatranscriptome728Y
F010923Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0213845_12130021F010923N/AGRAAGSERKSGGFARWTGRQQRRLNALIPRDAKIPEGSGDRRRGRLNRVVEVQRAPGVEAAATGANREAVVEPKGRTGTEANLEGCEVAGWEL
Ga0213845_12130022F001296GGAGMEVAERRQPLWASKKPLRATGSGQEAASGEPGSIDPWAGENSQRGAERRIVRRSCSQCSMPCMPVESQAGNQVTWN

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