Scaffold Ga0213845_1213002

Overview

Basic Information

• Taxon OID: 3300021929
• Scaffold ID: Ga0213845_1213002
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 517
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.1553
  • Long. (^o): -78.3938

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001296	Metagenome / Metatranscriptome	728	Y
F010923	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213845_12130021	F010923	N/A	GRAAGSERKSGGFARWTGRQQRRLNALIPRDAKIPEGSGDRRRGRLNRVVEVQRAPGVEAAATGANREAVVEPKGRTGTEANLEGCEVAGWEL
Ga0213845_12130022	F001296	GGAG	MEVAERRQPLWASKKPLRATGSGQEAASGEPGSIDPWAGENSQRGAERRIVRRSCSQCSMPCMPVESQAGNQVTWN