Basic Information | |
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Taxon OID | 3300021929 Open in IMG/M |
Scaffold ID | Ga0213845_1155932 Open in IMG/M |
Source Dataset Name | Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 771 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania | |||||||
Coordinates | Lat. (o) | 41.1553 | Long. (o) | -78.3938 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F044272 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213845_11559321 | F044272 | N/A | MVVQTRSGNRNKGKGGGMNVTGGFDKLSAIRMVDVPIPGPGVYTFEEALTNADRVWMEWHPSAAIEGKRRRAFLSKSGISDPSEILTDGGRQLPRKGLSCNLTDRRAVAFGPGKFKVWIASERAMNSSTVTQHELPSQLLQLVAPGNTASPPRQGPSVVSTPARRG |
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