Scaffold Ga0063134_1021442

Overview

Basic Information

• Taxon OID: 3300021928
• Scaffold ID: Ga0063134_1021442
• Source Dataset Name: Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S9 C1 B7 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3495
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 38.420489
  • Long. (^o): -13.575978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063134_10214424	F094857	AGGGGG	VEKLDQEECLEIWGHLVDLENLECLVKLADRALLERPGCPVKRAQMDQEDPQAKEDHRELKACQAWKAVRDPLVLMDQMDRLDHLDLMGLLGIEEFLVYQALLVQLEPQANKDHKEKGEILASQESKALRDHLGLLVLPGLLESEVSGVRRVHQESRELQGWAVDLATRVHLVQRE
Ga0063134_10214425	F085090	AGGAG	VCQDLLGWLASLDQLASLDHLVYRAALERLDHRDNLEPRATAVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQGLMDPLVVWATLVPQDQEDHQARKAREVHLASSVLLGLLALQARAMEWTWLP