NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214480_100155

Scaffold Ga0214480_100155


Overview

Basic Information
Taxon OID3300021907 Open in IMG/M
Scaffold IDGa0214480_100155 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32007
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (11.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010163Metagenome / Metatranscriptome307Y
F019658Metagenome / Metatranscriptome228Y
F064770Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0214480_10015516F019658N/AMKINRIKSQNYKLFKYNLLKLQIYSNESIFDLSNFSNSTLEQIEAYLKQVLKIIFEYHVXQFKILFIGFPVVCKMKQMKLINFTNHNFISEKSXVSGVFRNRFSILTYLKLIQLQSFSKSLKLLLTIKTKPHLVVVFNQKVELNTINEFYKSGIPILSFNXNSFDTLKVAYHTLGNFNFIEKNIKLTFFFLLYSLLKKTPLKKRRNQNF
Ga0214480_10015533F064770N/AMDFNLKTYKRSRIKHYFKRINFFFFFHGTSLNNESXIKTEQVFVNYGLKYFRVLNKLMINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK
Ga0214480_10015536F010163N/AMLLLKIANKSSFSQNLINHNYIKYLFHNIKVLKFIKKDAFSYYTQXLFLFISTNLYNLKIKTSCLMSYISFFNSQKLISYVININLSSTNTLINVNSIKGNPKFFYSAGMFSLQKNQKTRQPKAIITILRALLAKSKIFKVKPVAVHFNNVFFNHQSYIFKKLKQKIFMKLVTSYNFRSHNGCRLKKKKRIKIRTRTRKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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