NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063119_1025020

Scaffold Ga0063119_1025020


Overview

Basic Information
Taxon OID3300021901 Open in IMG/M
Scaffold IDGa0063119_1025020 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-12 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-4.668Long. (o)-7.06118Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019592Metatranscriptome228Y
F020834Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0063119_10250201F020834AGAAGMSGKDEEKPLLNKFETKERTQVEEMEDIGTGNPNFAVAIQYSIRTAVMMCLLASIVWVPAIRKPFPNQVQARVPLMVCLFVFTVNPLLGTAVQNAICGILGTFWACLHMWVMNGIFPGGMKEGMSPTSATAIFGWANFLIFTFLVLWCKCGIGTKMFALATHIGFMLAFLDPKSTMPFSENFTISHRGTAVNTMLATILGCLAAPLMNLIPYPLAFAYNNMKDNAVKASADTAKLFESIIVYYCGSEASVVVESEVKHAVDLRAELDGLGGAIGCSFWEGFDIGTRGTVRALMDSHAGLMNNIYDRLRAILIIARSEDFGSSHTAIMSKIRNASMQVALATTKLLNAVTVAATDGDISDSEKADLKKIGG
Ga0063119_10250202F019592N/AMVISAIQRRQTSKKLVDEAKAAVKALAKDFDAARKAAGKPISADLLGENYFVLTISAYARLVIDYTDMMISSPPQGAGIGAAIVGGLSSTWDFAAMTERFNLNFTIVHFIALIICWCWSVFVDNWGGGCVITAVFLMSPAVCPDIQAFLNVLNAVVLAVVAGTIVFQWTCGSGF
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