Scaffold Ga0063125_1046338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063125_1046338

Scaffold Ga0063125_1046338

Overview

Basic Information
Taxon OID	3300021885 Open in IMG/M
Scaffold ID	Ga0063125_1046338 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-19 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	655
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-26.4417	Long. (^o)	9.9808	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006548	Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063125_10463381	F006548	N/A	ETLQSLAEDLLSVNPVEGMASVRDGMKAVSGKLDLKTALKAVAHKDLPSDVQSLVSSASTSTGGFDESSMAKARIALNNLVEAAWVELDDKIIECKEYQEMNRATFDQVTIDISRLVEQITDLERVETESLEGIKKTEEAIKEVEAELSKETKIYNYNYAKNSEELTKRQNDLDVFQFILTFTRCADATSLIQHAGGANASRICAIKGGGHAMCFENH

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