Scaffold Ga0063118

Basic Information
Taxon OID	3300021880 Open in IMG/M
Scaffold ID	Ga0063118_1007343 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-11 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-11 (Eukaryote Community Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2633
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2633

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-2.0445	Long. (^o)	-9.4216	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Southern Ocean

Coordinates

Lat. (^o)

-2.0445

Long. (^o)

-9.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008671	Metatranscriptome	329	Y
F020834	Metatranscriptome	221	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0063118_10073431	F020834	N/A	MSGIDEEKPLLKKMDTKDKKTIDEMEDVGGVGNANFATAIQLSVRASVMMCLLAAIVWVPAIRKPFPNQVQARIPLVICLFVFTINPLLGTAIQNCCCGILGTFWACLHMWVMNGIFPGGMKEGMSPTSATAIFGWANFLIFTFLVLFCKCGIGTKMFALATDIGFMLAFLDPKSTVPFSENFTISHRGTAVNVMLATILGCIAAPLMNLLPYPMTTAFSSMKGNALKASADTAKLFTTIIEYYCGSEASVVVAVQVKHAVDLRAELDGMGGAIGAAWFEGFDMGVRGTIRALMDSHSGLMNNVYDRLRAILTVVQTEDFGPSHTTVADKIRTSAMKVAMATAALLNKVTEAATDGDISSQEKLELASLVADAKTALKELAKDFHEVRKTLKPVSTDLLGENYFVLTISAYARLVIDYSEMMMNNPPQGVGFGAGLASGLTSTWDFGAMTDRFNINFTIVHFCALLVCWFWSVYVDNWGGGCVITAVFLMSPAICPDIQVFLNVLNAVIVAVVAGTLVFQWTCGSGFGDQILPFAALVLWAVGLYGVFAKSVFLLPCLVFVALTPFRWVTSCPTGEIAAGARALWAGMVANVIAIVLVCSFQFFLAVDRPSNLAVNSLDDAFGGLRKAFDAFWKQ
Ga0063118_10073432	F008671	GAG	MYRCPWKAGLYLDIVSHVQSIRLDILMLWFAMAGSDGKPDAIFAKFGDSGHFKSVKEDLNSTLEDAHGLAIAMISHEGGKFSGLSNLKHTTGIDDLGALPGLITELNGKMKIPATAPDSMEDDEVCQVSTVCMLLDITIKHIADTMKVTIRQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0063118_1007343

Overview

Ecosystem & Geography

Associated Families

Sequences