Scaffold Ga0213851_1776250

Overview

Basic Information

• Taxon OID: 3300021860
• Scaffold ID: Ga0213851_1776250
• Source Dataset Name: Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37216
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (78.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023081	Metagenome / Metatranscriptome	211	Y
F023315	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213851_177625025	F023315	AGGA	MTMRRLQDEIRDIRVPSEALARWALETPVLAQEATCAALAFLVNTEHVASTLLPVPTLLRSEQAVLDPDGFLRQPRGAVEHFRLRTTRAMAWMDLFIFFRERFPAAAKRQPPETLYGLSNLFARHEDELEAAVDLVVRECVMPEIEDLLARTLKYPPLQALLQRLRDTDPQRSADARRLAASVLGELTGTRLWRVRTRLVTTATRALWAARPLLDELERGGLKVDRTRAARGFARRLEEAVAEMPGAPFLKSILHQLAGAAEGEPPRNQGPVESTYND
Ga0213851_177625026	F023081	N/A	MRRLLPPRQTIWLLVAGLLCLMAAGVASMSKFGPPRGHVYAVLQKER