Scaffold Ga0213851

Basic Information
Taxon OID	3300021860 Open in IMG/M
Scaffold ID	Ga0213851_1113823 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30459
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

30459

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	41.1752	Long. (^o)	-78.4168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania

Coordinates

Lat. (^o)

41.1752

Long. (^o)

-78.4168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F020420	Metagenome / Metatranscriptome	224	Y
F062651	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213851_111382310	F062651	AGGAGG	MSKFIALVSLAALLISCAHEEAAPVKAERNWEQGLDADHAPQIAPLGPVETDQFAYDFVRRREREHALTTKSTAADLDEIIHASSQVLASALSLPLFKAGVYFGQPRLIDRGCNAAQRVTNSSLRTSGQVEAVLQACAALTTGRSGNDGCGDAQQKLREAYALLAADKAQDAGRTAAEAVRMLRDRCPKISAPLRTPVDPSTRGFLIVWTLHANDAPPVTFLAGEPAPATAEAINDAFLRGVQAVRPVAHNP
Ga0213851_111382316	F020420	AGGTGG	MVPLDVAATLTRMLSVTAGARAAAGAPGPGTRLRGKSGFHNGPWLGIFDFDALDRAERDALAFWLRTHAEPLLLVRHLLLAKPLSGEIFIELTPRALEAMPEGWRESPRPILVFAPAGRVQPQRLRHYLDALSRLRVPLLAGGSELWAVREFDVEFAVALAQLSDPAAHAAFRTAVDPCQARIFDQQLPAAEAALLDDLVGARDEEGAVAMDLANLSSLYPKAHPLAVFAAVERAHNRRRGEAERTLFSGRTIEARHSARGFPESPRPATFEFAARAGPLLPAEVQRIFEASELLSQG
Ga0213851_11138238	F010345	GAGG	MGLFGRFWHYSIDTYGGAPVLLLITLLQLALLGWVIGEVARARWERSDPSLSPDARRIRAAHRAELWQKNVRPLALTLMLLGPGIGLGMSTLLGALGMGSLGDVMGTSAGADQLAATMASAYREISYAYFLMVGGTFPMLLGPVIVLCARRLDEEGHDARGGDPDDLLLHTLKSLLAVAESQASRAQVDAARTHALLEQTAAALQRRVAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213851_1113823

Overview

Ecosystem & Geography

Associated Families

Sequences