Scaffold Ga0213849_1230724

Overview

Basic Information

• Taxon OID: 3300021857
• Scaffold ID: Ga0213849_1230724
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 702
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.6118
  • Long. (^o): -78.4221

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025923	Metagenome / Metatranscriptome	199	Y
F044534	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213849_12307241	F025923	N/A	EQSKRSGLKDVAESTAGIIPGDRGMDGGSWCCHSLPLAKAG
Ga0213849_12307242	F044534	N/A	MRGIYHQFLWPESCPVSSHTNQELSHEARLETVPSGVRPTGRFDPCADAVTPEGFGCYCADQNAVVIPGGTTPPKGPARSTSGARNGVTAAGSERT