Scaffold Ga0226657_10028602

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226657_10028602

Scaffold Ga0226657_10028602

Overview

Basic Information
Taxon OID	3300021843 Open in IMG/M
Scaffold ID	Ga0226657_10028602 Open in IMG/M
Source Dataset Name	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3210
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Toronto, Ontario, canada
Coordinates	Lat. (^o)	43.5479	Long. (^o)	-79.6609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061015	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226657_100286024	F061015	N/A	MAERKRQRQVRCENQYVQDRLASQKMSQVYHWLVPEDPLGEPAAELALAKHEKDRSHLRASFL

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