Scaffold Ga0226836_10584804

Overview

Basic Information

• Taxon OID: 3300021792
• Scaffold ID: Ga0226836_10584804
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 639
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Illium vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 18.21359
  • Long. (^o): 144.70748
  • Depth (m): 3582.53

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008914	Metagenome	326	Y
F020257	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226836_105848041	F020257	N/A	LNPPHYGIHYYNPEDRKHADSWYYYATSAKDYERAKKENYAMSYWKPNCGYVCWVGENYKIKEIDYGVIPIEDLRPPSGAYALQEALKGGHDRIEVFGFDSIAGVFSTSSQIAYKEHDSDDGKIIEDRLDKWMTFYKTVTEHYNEIEIIWHKKQ
Ga0226836_105848042	F008914	AGGA	MEDPFTVQIEAQRTAAIEETRKWVRGWEADQREMVLWILEEEVRHDKLMDFVHE