Scaffold Ga0226836_10504860

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226836_10504860

Scaffold Ga0226836_10504860

Overview

Basic Information
Taxon OID	3300021792 Open in IMG/M
Scaffold ID	Ga0226836_10504860 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	694
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Illium vent field, Mariana back arc basin
Coordinates	Lat. (^o)	18.21359	Long. (^o)	144.70748	Alt. (m)		Depth (m)	3582.53
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005516	Metagenome	398	Y
F032311	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226836_105048601	F005516	GAG	MKSFKGYLTEFAMQSTSDYVFNAGSSSSGLMIPISGPMMKRIWPDTIRTTVFHTTDLSGLQKLKGLEGGKKTISAFFSMMDKYMQRGIATGGGIVAEMDADVLISAKDDIMSQVDKTGRRWVEMSWFANAQSYGTGPAFGKVEKELNTLIANLVKKHLPKGKEVEQTRFFAHDTGTVFDIWGNMKRHLKGDGRKI
Ga0226836_105048602	F032311	N/A	KSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK

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