Scaffold Ga0226832_10102472

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10102472
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F042567	Metagenome	158	Y
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_101024722	F024807	N/A	MPFGLVYHDGDQQLTLKLNGNPFVLTRDEADALAFHLNSFVEDMDQQRKPQRSVEGTDMEAEAHGEMLMAQHDDDPNPYHGDYSED
Ga0226832_101024723	F042567	AGGA	MTEKAKEKSGRRLKTDQEKAKDHQALADGYNRLIGAVDNFFEHYGHCEGDYGDIGMRHYDRLKEAHDRLIMPKQRMGETHIVVDWSELTDEERKTSSSAYWYEND
Ga0226832_101024724	F058443	N/A	LKNKKSGHEVRLLVILSDSKQGYLASDSLSKAKEGNWAWYNLNEWSEI