Scaffold Ga0226832_10073418

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10073418
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1213
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F022754	Metagenome / Metatranscriptome	213	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100734182	F022754	N/A	MNELVIAIMLVIPSPYKIVNWTVNQVPTQIQLVHKSGLEVSYNASPVSCSFQPRNSKEMVFKSSDTDCYAVYDLSSPSFIRHRDFWFPVKHIRR
Ga0226832_100734183	F002078	AGGAG	MDIATMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLSTVWPIFNWLAGNVFNNINHPKGMAAVAEVEKEIDEAKAKVRDRAGMPDVLDGM
Ga0226832_100734184	F048916	GGAG	MKLKQRFVTGLVCLTFLTGCSTAILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLTQDTKQWLLQNNPPEIVSQDLAQVAKNNDIYKQVCDPKEPEDQDPLD